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• Journal Articles
  
  
• Algorithms for Integrated Routing and Scheduling for Aggregating Data from Distributed Resources on a Lambda Grid.
  Amitabha Banerjee, Wu-chun Feng, Dipak Ghosal, Biswanath Mukherjee.
  In IEEE Transactions on Parallel and Distributed Systems, 19 (1): January 2008.
    BibTeX   
   
• Green Supercomputing Comes of Age.
  Wu-chun Feng, Xizhou Feng, Rong Ge.
  In IT Professional, 10 (1): 20-26, January 2008.
    BibTeX    Preprint (PDF)   
   
• The Green500 List: Encouraging Sustainable Supercomputing.
  Wu-chun Feng, Kirk Cameron.
  In IEEE Computer, 40 (12): 50-55, December 2007.
    BibTeX    Preprint (PDF)   
   
• Bridging the Ethernet-Ethernot Performance Gap.
  Pavan Balaji, Wu-chun Feng, Dhabaleswar K. Panda.
  In IEEE Micro (Special Issue: High-Performance Interconnects), 26 (3): 24-40, May 2006.
    BibTeX    Preprint (PDF)   
   
• Analyzing MPI Performance over 10-Gigabit Ethernet.
  Justin (Gus) Hurwitz, Wu-chun Feng.
  In Journal of Parallel and Distributed Computing, Special Issue: Design and Performance of Networks for Super-, Cluster-, and Grid-Computing, 65 (10): 1253-1260, October 2005.
  LA-UR 05-2010.  
    BibTeX    Preprint (PDF)   
   
• Anatomy of UDP and M-VIA for Cluster Communication.
  Xiao Zhang, Laxmi N. Bhuyan, Wu-chun Feng.
  In Journal of Parallel and Distributed Computing, Special Issue: Design and Performance of Networks for Super-, Cluster-, and Grid-Computing, 65 (10): 1290-1298, October 2005.
  LA-UR 05-2009.  
    BibTeX    Preprint (PDF)   
   
• The Importance of Being Low Power in High-Performance Computing.
  Wu-chun Feng.
  In Cyberinfrastructure Technology Watch Quarterly (CTWatch Quarterly), 1 (3): August 2005.
  LA-UR 05-5650.  
    BibTeX    Preprint (PDF)   
   
• Effective Dynamic Voltage Scaling through CPU-Boundedness Detection.
  Chung-hsing Hsu, Wu-chun Feng.
  In Lecture Notes in Computer Science, February 2005.
  LA-UR 04-7195.  (This paper is an extended version of a paper that appeared in 4th IEEE/ACM Workshop on Power-Aware Computer Systems in conjunction with the 37th IEEE/ACM International Symposium on Microarchitecture, Portland, OR, December 2004.)
    BibTeX    Preprint (PDF)   
   
• FAST TCP: From Theory to Experiments.
  Cheng Jin, David Wei, Steven H. Low, Gary Buhrmaster, Julian Bunn, Hyojeong D. Choe, Les R. Cottrell, John C. Doyle, Wu-chun Feng, Oliver Martin, Harvey Newman, Fernando Paganini, Sylvian Ravot, Suresh Singh.
  In IEEE Network, 19 (1): 4-11, January 2005.
  LA-UR 05-4539.  
    BibTeX    Preprint (PDF)   
   
• User-Space Auto-Tuning for TCP Flow Control in Computational Grids.
  Mark K. Gardner, Sunil Thulasidasan, Wu-chun Feng.
  In Computer Communications, Special Issue on Network Support for Grid Computing,, 27 (14): 1364-1374, September 2004.
  LA-UR 03-1807.  
    BibTeX    Preprint (PDF)    Preprint (Postscript)   
   
• Scheduling and Transport for File Transfers on High-Speed Optical Circuits.
  Malathi Veeraraghavan, Xuan Zheng, Wu-chun Feng, Hojun Lee, Edwin Chong, Hua Li.
  In Journal of Grid Computing, 1 (4): 395-405, June 2004.
  LA-UR 04-2008.  
    BibTeX    Preprint (PDF)   
   
• End-to-End Performance of 10-Gigabit Ethernet on Commodity Systems.
  Justin (Gus) Hurwitz, Wu-chun Feng.
  In IEEE Micro, 24 (1): 10-22, January 2004.
  LA-UR 04-0743.  
    BibTeX    Preprint (PDF)   
   
• Automatic Flow-Control Adaptation for Enhancing Network Performance in Computational Grids.
  Wu-chun Feng, Mark K. Gardner, Michael E. Fisk, Eric Weigle.
  In Journal of Grid Gomputing (inaugural issue), 1 (1): 63-74, 2003.
  LA-UR 03-0714.  
    BibTeX    Preprint (PDF)    Preprint (Postscript)   
   
• Making a Case for Efficient Supercomputing.
  Wu-chun Feng.
  In ACM Queue, 1 (7): 54-64, October 2003.
  LA-UR 03-6901.  
    BibTeX    Preprint (PDF)   
   
• Packet Spacing: An Enabling Mechanism for the Delivery of Multimedia Content in Computational Grids.
  Annette C. Feng, Apu C. Kapadia, Wu-chun Feng, Geneva G. Belford.
  In Journal of Supercomputing, 23 (1): August 2002.
  LA-UR 01-4904.  (extended version)
    BibTeX    Preprint (PDF)    Preprint (Postscript)   
   
• The MAGNeT Toolkit: Design, Evaluation, and Implementation.
  Wu-chun Feng, Mark K. Gardner, Jeffrey R. Hay.
  In Journal of Supercomputing, 23 (1): 67-79, August 2002.
  LA-UR 01-4843.  
    BibTeX    Preprint (PDF)    Preprint (Postscript)   
   
• The Quadrics Network : High-Performance Clustering Technology.
  Fabrizio Petrini, Wu-chun Feng, Adolfy Hoisie, Salvador Coll, Eitan Frachtenberg.
  In IEEE Micro, 22 (1): 46-57, January 2002.
  LA-UR 01-4100.  (extended version)
    BibTeX    Preprint (PDF)   
   
• Improved Resource Utilization with Buffered Coscheduling.
  Fabrizio Petrini, Wu-chun Feng.
  In Journal of Parallel Algorithms and Applications (Special Issue), 16 (2-3): 123-144, 2000.
  LA-UR 00-3476.  
    BibTeX    Preprint (Postscript)   
   
• Bounding Completion Times of Jobs with Arbitrary Release Times, Variable Execution Times, and Resource Sharing.
  Jun Sun, Mark K. Gardner, Jane W. S. Liu.
  In IEEE Transactions on Software Engineering, 23 (10): 603-615, October 1997. [Based on research performed at UIUC]
    BibTeX    Preprint (PDF)    Preprint (Postscript)   
   
• Algorithms for Scheduling Real-Time Tasks with Input Error and End-to-End Deadlines.
  Wu-chun Feng, Jane W. S. Liu.
  In IEEE Transactions on Software Engineering, 23 (2): 93-106, February 1997. [Based on research performed at UIUC]
    BibTeX    Preprint (PDF)   
   
• Conference Papers
  
  
•   Cell-SWat: Modeling and Scheduling Wavefront Computations on the Cell Broadband Engine.
  Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dimitrios S. Nikolopoulos.
  In Proceedings of the 5th ACM International Conference on Computing Frontiers, Ischia, Italy, May 2008.
    BibTeX    Paper (PDF)   
   
•   Towards a Virtual Ecosystem for K-8 Education.
  Mark Gardner, Wu-chun Feng.
  In Proceedings of the International Conference on the Virtual Computing Initiative (ICVCI), Research Triangle Park, NC, May 2008.
    BibTeX    Paper (PDF)   
   
• Modeling and Analysis of Power in Multicore Network Processors.
  Song Huang, Yan Luo, Wu-chun Feng.
  In Proceedings of the 4th IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 22nd International Parallel & Distributed Processing Symposium), Miami, Florida, USA, April 2008.
    BibTeX    Paper (PDF)   
   
• Semantics-based Distributed I/O for mpiBLAST (Short Paper).
  Pavan Balaji, Wu-chun Feng, Jeremy Archuleta, Heshan Lin, Rajkumar Kettimuthu, Rajeev Thakur, Xiaosong Ma.
  In Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Salt Lake City, Utah, USA, February 2008.
    BibTeX    Paper (PDF)   
   
• Achieving Edge-Based Fairness in a Multi-Hop Environment.
  Mustafa Arisoylu, Wu-chun Feng.
  In Proceedings of the 5th IEEE Consumer Communications and Networking Conference, Las Vegas, Nevada, USA, January 2008.
    BibTeX    Paper (PDF)   
   
• Analyzing the Impact of Supporting Out-of-Order Communication on In- Order Performance with iWARP.
  Pavan Balaji, Wu-chun Feng, Sitha Bhagvat, Dhabaleswar Panda, Rajeev Thakur, William Gropp.
  In Proceedings of the ACM/IEEE SC|07: The International Conference on High-Performance Computing, Networking, Storage, and Analysis, Reno, Nevada, USA, November 2007.
    BibTeX    Paper (PDF)   
   
• A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search.
  Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng.
  In Proceedings of the 23rd IEEE International Conference on Software Maintenance, Paris, France, October 2007.
    BibTeX    Paper (PDF)   
   
• A Pluggable Framework for Parallel Pairwise Sequence Search.
  Jeremy S. Archuleta, Wu-chun Feng, Eli Tilevich.
  In Proceedings of the International Conference of the IEEE Engineering in Medicine and Biology Society, Lyon, France, August 2007.
    BibTeX    Paper (PDF)   
   
• An Analysis of 10-Gigabit Ethernet Protocol Stacks in Multicore Environments.
  Ganesh Narayanaswamy, Pavan Balaji, Wu-chun Feng.
  In Proceedings of the 15th International Symposium on High-Performance Interconnects (HotI 2007), Palo Alto, California, August 2007.
    BibTeX    Paper (PDF)   
   
• Parallel Genomic Sequence-Search on a Massively Parallel System.
  Oystein Thorsen, Brian Smith, Carlos P. Sosa, Karl Jiang, Heshan Lin, Amanda Peters, Wu-chun Feng.
  In Proceedings of the ACM International Conference on Computing Frontiers, Ischia, Italy, May 2007.
    BibTeX    Paper (PDF)   
   
• High-Fidelity Monitoring in Virtual Computing Environments.
  Wu-chun Feng, Venkatram Vishwanath, Jason Leigh, Mark Gardner.
  In Proceedings of the International Conference on the Virtual Computing Initiative (ICVCI), Research Triangle Park, NC, May 2007.
    BibTeX    Paper (PDF)   
   
• Green Supercomputing in a Desktop Box.
  Wu-chun Feng, Avery Ching, Chung-hsing Hsu.
  In Proceedings of the 3rd IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 21st International Parallel & Distributed Processing Symposium), Long Beach, California, March 2007.
    BibTeX    Paper (PDF)   
   
• End-System Aware, Rate-Adaptive Protocol for Network Transport in LambdaGrid Environments.
  Pallab Datta, Wu-chun Feng, Sushant Sharma.
  In Proceedings of the ACM/IEEE SC|06: The International Conference on High-Performance Computing, Networking, Storage, and Analysis, Tampa, FL, November 2006.
    BibTeX    Paper (PDF)   
   
• Parallel Genomic Sequence-Searching on an Ad-Hoc Grid: Experiences, Lessons Learned, and Implications.
  Mark K. Gardner, Wu-chun Feng, Jeremy S. Archuleta, Heshan Lin, Xiaosong Ma.
  In Proceedings of the ACM/IEEE SC|06: The International Conference on High-Performance Computing, Networking, Storage, and Analysis, Tampa, FL, November 2006. Best Paper Nominee
    BibTeX    Paper (PDF)   
   
• Real-Time Transcription of Radiology Dictation: A Case Study for Multimedia TabletPCs.
  Wu-chun Feng.
  In Proceedings of the Microsoft eScience Workshop, Baltimore, Maryland, October 2006.
    BibTeX    Paper (PDF)   
   
• Exploring I/O Strategies for Parallel Sequence Database Search Tools with S3aSim.
  Avery Ching, Wu-chun Feng, Heshan Lin, Xiaosong Ma, Alok Choudhary.
  In Proceedings of the 15th IEEE International Symposium on High-Performance Distributed Computing (HPDC’06), Paris, France, June 2006.
    BibTeX    Paper (PDF)   
   
• A Feedback Mechanism for Network Scheduling in LambdaGrids.
  Pallab Datta, Sushant Sharma, Wu-chun Feng.
  In Proceedings of the 6th IEEE/ACM Symposium on Cluster Computing and the Grid (CCGrid’06), Singapore, May 2006.
    BibTeX    Paper (PDF)   
   
• Making a Case for a Green500 List.
  Sushant Sharma, Chung-hsing Hsu, Wu-chun Feng.
  In Proceedings of the 2nd IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 20th International Parallel & Distributed Processing Symposium), Rhodes, Greece, April 2006.
    BibTeX    Paper (PDF)   
   
• RAPID: An End-System Aware Protocol for Intelligent Data-Transfer over LambdaGrids.
  Amitabha Banerjee, Wu-chun Feng, Biswanath Mukherjee, Dipak Ghosal.
  In Proceedings of the 20th International Parallel & Distributed Processing Symposium (IPDPS’06), Rhodes, Greece, April 2006.
    BibTeX    Paper (PDF)   
   
• End-system Performance Aware Transport over Optical Circuit-Switched Connections.
  Amitabha Banerjee, Wu-chun Feng, Biswanath Mukherjee, Dipak Ghosal.
  In Proceedings of the IEEE INFOCOM High-Speed Networking Workshop: The Terabits Challenge (in conjunction with the 25th IEEE INFOCOM), Barcelona, Spain, April 2006.
    BibTeX    Paper (PDF)   
   
• Efficient Data Handling in Comparative Genome Analysis Applications.
  Heshan Lin, Xiaosong Ma, Wu-chun Feng, Al Geist, Nagiza Samatova.
  In Proceedings of the 12th SIAM Conference on Parallel Processing for Scientific Computing, San Francisco, California, February 2006. (electronic version unavailable)
    BibTeX   
   
• A Case for UDP Offload Engines in LambdaGrids.
  Venkatram Vishwanath, Pavan Balaji, Wu-chun Feng, Jason Leigh, Dhabaleswar K. Panda.
  In Proceedings of the 4th International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet’06), Nara, Japan, February 2006.
    BibTeX    Paper (PDF)   
   
• Whole Genome, Physics-Based Sequence Alignment for Pathogen Signature Design.
  Jason D. Gans, Wu-chun Feng, Murray Wolinsky.
  In Proceedings of the 12th SIAM Conference on Parallel Processing for Scientific Computing, San Francisco, California, February 2006. (electronic version unavailable)
    BibTeX   
   
• A Power-Aware Run-Time System for High-Performance Computing.
  Chung-hsing Hsu, Wu-chun Feng.
  In Proceedings of the ACM/IEEE SC2005: The International Conference on High-Performance Computing, Networking, and Storage, Seattle, Washington, November 2005.
    BibTeX    Paper (PDF)   
   
• A Feasibility Analysis of Power Awareness in Commodity-Based High-Performance Clusters.
  Chung-hsing Hsu, Wu-chun Feng.
  In Proceedings of the 7th IEEE International Conference on Cluster Computing (CLUSTER'05), Boston, Massachusetts, September 2005.
    BibTeX    Paper (PDF)   
   
• Head-to-TOE Evaluation of High-Performance Sockets over Protocol Offload Engines.
  Pavan Balaji, Wu-chun Feng, Qi Gao, Ranjit Noronha, Weikuan Yu, Dhabaleswar K. Panda.
  In Proceedings of the 7th IEEE International Conference on Cluster Computing (CLUSTER'05), Boston, Massachusetts, September 2005.
  LA-UR 05-4148.  
    BibTeX    Paper (PDF)   
   
• Performance Characterization of a 10-Gigabit Ethernet TOE.
  Wu-chun Feng, Pavan Balaji, Chris Baron, Laxmi Bhuyan, Dhabaleswar Panda.
  In Proceedings of the 13th IEEE International Symposium on High-Performance Interconnects (Hot Interconnects), Palo Alto, California, August 2005.
  LA-UR 05-2635.  
    BibTeX    Paper (PDF)   
   
• Reducing Overheating-Induced Failures via Performance-Aware CPU Power Management.
  Chung-hsing Hsu, Wu-chun Feng.
  In Proceedings of the 6th International Conference on Linux Clusters: The HPC Revolution 2005, April 2005.
  LA-UR 05-1581.  
    BibTeX    Paper (PDF)   
   
• Towards Efficient Supercomputing: A Quest for the Right Metric.
  Chung-hsing Hsu, Wu-chun Feng, Jeremy S. Archuleta.
  In Proceedings of the 1st IEEE Workshop on High-Performance, Power-Aware Computing (in conjunction with the 19th International Parallel & Distributed Processing Symposium), Denver, Colorado, April 2005. Presentation
    BibTeX    Paper (PDF)   
   
• Efficient Data Access for Parallel BLAST.
  Heshan Lin, Xiaosong Ma, Praveen Chandramohan, Al Geist, Nagiza Samatova.
  In Proceedings of the IEEE International Parallel & Distributed Processing Symposium, Denver, Colorado, April 2005.
    BibTeX    Paper (PDF)   
   
• Q-Composer and CpR: A Probabilistic Synthesizer and Regulator of Traffic.
  Sami Ayyorgun, Sarut Vanichpun, Wu-chun Feng.
  In Proceedings of the 24th IEEE Conference on Computer Communications (INFOCOM'05), Miami, Florida, March 2005.
    BibTeX    Paper (PDF)   
   
• Routing and Scheduling Large File Transfers over Lambda Grids.
  Amitabha Banerjee, Wu-chun Feng, Dipak Ghosal, Biswanath Mukherjee.
  In Proceedings of the 3rd International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet'05), Lyon, France, February 2005.
  LA-UR 05-7911.  
    BibTeX    Paper (PDF)   
   
• A Systematic Approach for Providing End-to-end Probabilistic QoS Guarantee.
  Sami Ayyorgun, Wu-chun Feng.
  In Proceedings of the 13th IEEE International Conference on Computer Communications and Networks (ICCCN'04), Chicago, Illinois, October 2004.
  LA-UR 03-7267.  
    BibTeX    Paper (PDF)   
   
• Green Destiny and Its Evolving Parts.
  Wu-chun Feng, Chung-hsing Hsu.
  In Proceedings of the Innovative Supercomputer Architecture Award, 19th International Supercomputer Conference, Heidelberg, Germany, June 2004.
  LA-UR 04-3556.  
    BibTeX    Paper (PDF)    Presentation (PDF)   
   
• The Origin and Evolution of Green Destiny.
  Wu-chun Feng, Chung-hsing Hsu.
  In Proceedings of the IEEE Cool Chips VII: An International Symposium on Low-Power and High-Speed Chips, Yokohama, Japan, April 2004.
  LA-UR 04-1924.  
    BibTeX    Paper (PDF)   
   
• Re-Architecting Flow-Control Adaptation for Grid Environments.
  Adam Engelhart, Mark K. Gardner, Wu-chun Feng.
  In Proceedings of the 18th IEEE International Parallel and Distributed Processing Symposium, (IPDPS'04), Santa Fe, New Mexico, April 2004.
  LA-UR 04-0494.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• A Deterministic Characterization of Network Traffic for Average Performance Guarantee.
  Sami Ayyorgun, Wu-chun Feng.
  In Proceedings of the 38th Annual Conference on Information Sciences and Systems (CISS'04), Princeton, New Jersey, March 2004.
  LA-UR 03-4477.  
    BibTeX    Paper (PDF)   
   
• A High-Fidelity Software Oscilloscope for Globus.
  Mark K. Gardner, Wei Deng, Stephen T. Markham, Celso L. Mendes, Wu-chun Feng, Daniel A. Reed.
  In Proceedings of the GlobusWorld 2004, San Francisco, California, January 2004.
  LA-UR 03-7681.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Optimizing 10-Gigabit Ethernet for Networks of Workstations, Clusters and Grids: A Case Study.
  Wu-chun Feng, Justin (Gus) Hurwitz, Harvey Newman, Sylvain Ravot, Les R. Cottrell, Olivier Martin, Fabrizio Coccetti, Cheng Jin, David Wei, Steven H. Low.
  In Proceedings of the SC2003: High-Performance Networking and Computing Conference, Phoenix, Arizona, November 2003.
  LA-UR 03-5728.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• CHEETAH: Circuit-Switched High-Speed End-to-End Transport ArcHitecture.
  Malathi Veeraraghavan, Xuan Zheng, Hojun Lee, Mark K. Gardner, Wu-chun Feng.
  In Proceedings of the SPIE/IEEE Optical Networking and Computer Communications Conference (OptiComm), Dallas TX, October 2003. Best Paper Award
    BibTeX    Paper (PDF)   
   
• Green Destiny + mpiBLAST = Bioinfomagic.
  Wu-chun Feng.
  In Proceedings of the 10th International Conference on Parallel Computing (ParCo), September 2003.
  LA-UR 03-6651.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Initial End-to-End Performance Evaluation of 10-Gigabit Ethernet.
  Justin (Gus) Hurwitz, Wu-chun Feng.
  In Proceedings of the IEEE Hot Interconnects: A Symposium on High-Performance Interconnects, Palo Alto, California, August 2003.
  LA-UR 03-2713.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Optimizing GridFTP Through Dynamic Right-Sizing.
  Sunil Thulasidasan, Wu-chun Feng, Mark K. Gardner.
  In Proceedings of the IEEE Symposium on High-Performance Distributed Computing. (HPDC-2003), Seattle, Washington, June 2003.
  LA-UR 03-2486.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• The Design, Implementation, and Evaluation of mpiBLAST.
  Aaron E. Darling, Lucas Carey, Wu-chun Feng.
  In Proceedings of the ClusterWorld Conference & Expo and the 4th International Conference on Linux Cluster: The HPC Revolution 2003, San Jose, California, June 2003.
  LA-UR 03-2862.   Best Paper: Applications Track
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• The Design, Implementation, and Evaluation of a Compiler Algorithm for CPU Energy Reduction.
  Chung-hsing Hsu, Ulrich Kremer.
  In Proceedings of the PLDI 2003: ACM SIGPLAN Conference on Programming Language Design and Implementation, June 2003.
    BibTeX    Paper (PDF)   
   
• MAGNET: A Tool for Debugging, Analysis and Adaptation in Computing Systems.
  Mark K. Gardner, Wu-chun Feng, Michael Broxton, Adam Engelhart, Justin (Gus) Hurwitz.
  In Proceedings of the 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid'2003), Tokyo, Japan, May 2003.
  LA-UR 02-7170.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• MUSE: A Software Oscilloscope for Clusters and Grids.
  Mark K. Gardner, Michael Broxton, Adam Engelhart, Wu-chun Feng.
  In Proceedings of the 17th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2003), Nice, France, April 2003.
  LA-UR 02-7169.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Enabling Compatibility Between TCP Reno and TCP Vegas.
  Wu-chun Feng, Sarut Vanichpun.
  In Proceedings of the IEEE Symposium on Applications and the Internet (SAINT 2003), Orlando, Florida, January 2003.
  LA-UR 01-6506.  
    BibTeX    Paper (Postscript)   
   
• GREEN: Proactive Queue Management over a Best-Effort Network.
  Wu-chun Feng, Apu C. Kapadia, Sunil Thulasidasan.
  In Proceedings of the IEEE GlobeCom (GLOBECOM 2002), Taipei, Taiwan, November 2002.
  LA-UR 02-5524.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• High-Density Computing: A 240-Node Beowulf in One Cubic Meter.
  Michael Warren, Eric Weigle, Wu-chun Feng.
  In Proceedings of the SC 2002: High-Performance Networking and Computing Conference (SC2002), Baltimore, Maryland, November 2002.
  LA-UR 02-5194.  
    BibTeX    Paper (PDF)   
   
• On the Transient Behavior of TCP Vegas.
  Sarut Vanichpun, Wu-chun Feng.
  In Proceedings of the 11th IEEE International Conference on Computer Communications and Networks (IC3N'02), Miami, Florida, October 2002.
  LA-UR 02-5522.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Securing Wireless Communication in Heterogeneous Environments.
  Wu-chun Feng.
  In Proceedings of the IEEE Symposium on Military Communications (MILCOM 2002), Los Angeles, California, October 2002.
  LA-UR 02-5523.  (electronic version unavailable)
    BibTeX   
   
• The Bladed Beowulf: A Cost-Effective Alternative to Traditional Beowulfs.
  Wu-chun Feng, Michael Warren, Eric Weigle.
  In Proceedings of the IEEE International Conference on Cluster Computing (IEEE Cluster 2002), Chicago, Illinois, September 2002.
  LA-UR 02-2582.  
    BibTeX    Paper (PDF)   
   
• Honey, I Shrunk the Beowulf!.
  Wu-chun Feng, Michael Warren, Eric Weigle.
  In Proceedings of the International Conference on Parallel Processing 2002 (ICPP 2002), Vancouver, Canada, August 2002.
  LA-UR 02-1210.  
    BibTeX    Paper (PDF)   
   
• Performance Tradeoffs of TCP Adaptation Methods.
  Nageswara S. V. Rao, Wu-chun Feng.
  In Proceedings of the IEEE International Conference on Networks (ICN'02), Atlanta, Georgia, August 2002.
  LA-UR 02-3589.  
    BibTeX    Paper (PDF)   
   
• A General Security Infrastructure for Wireless Communication.
  Wu-chun Feng, Jalal Al-Muhtadi.
  In Proceedings of the IEEE International Conference on Networks (ICN 2002), Atlanta, Georgia, August 2002.
  LA-UR 02-3582.  (electronic version unavailable)
    BibTeX   
   
• Dynamic Right-Sizing in FTP (drsFTP): An Automatic Technique for Enhancing Grid Performance.
  Mark K. Gardner, Wu-chun Feng, Michael E. Fisk.
  In Proceedings of the IEEE Symposium on High-Performance Distributed Computing. (HPDC-2002), Edinburgh, Scotland, July 2002.
  LA-UR 02-2799.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• A Comparison of TCP Automatic-Tuning Techniques for Distributed Computing.
  Eric Weigle, Wu-chun Feng.
  In Proceedings of the IEEE Symposium on High-Performance Distributed Computing (HPDC'02), Edinburgh, Scotland, July 2002.
  LA-UR 02-2492.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Dynamic Right-Sizing: An Automated, Lightweight, and Scalable Technique for Enhancing Grid Performance.
  Wu-chun Feng, Michael E. Fisk, Mark K. Gardner, Eric Weigle.
  In Proceedings of the 7th International IEEE Workshop on Protocols for High Speed Networks (PfHSN 2002), Berlin, Germany, April 2002.
  LA-UR 02-2052.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Monitoring Protocol Traffic with a MAGNeT.
  Mark K. Gardner, Wu-chun Feng, Jeffrey R. Hay.
  In Proceedings of the Passive & Active Measurement Workshop (PAM2002), Fort Collins, Colorado, March 2002.
  LA-UR 02-0808.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• TICKETing High-Speed Traffic with Commodity Hardware and Software.
  Eric Weigle, Wu-chun Feng.
  In Proceedings of the Passive & Active Measurement Workshop (PAM2002), Fort Collins, Colorado, March 2002.
  LA-UR 02-0809.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Capturing Network Traffic with a MAGNeT.
  Jeffrey R. Hay, Wu-chun Feng, Mark K. Gardner.
  In Proceedings of the 5th Annual Linux Showcase and Conference (ALS'01), Oakland, California, November 2001.
  LA-UR 01-5065.  SC2001 Pamphlet LA-UR 01-5656: PDF
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• An Inter-Realm, Cyber-Security Infrastructure for Virtual Supercomputing.
  Jalal Al-Muhtadi, Wu-chun Feng, Michael E. Fisk.
  In Proceedings of the 2nd Annual Los Alamos Computer Science Institute Symposium. (LACSI 2001), Santa Fe, New Mexico, October 2001.
  LA-UR 01-4860, LA-UR 01-5757, LA-UR 02-3313.  
    BibTeX    Paper (PDF)   
   
• Packet Spacing: An Enabling Mechanism for the Delivery of Multimedia Content in Computational Grids.
  Annette C. Feng, Wu-chun Feng, Geneva G. Belford.
  In Proceedings of the 2nd Los Alamos Computer Science Institute Symposium (LACSI 2001), Santa Fe, New Mexico, October 2001.
  LA-UR 01-4859.  (Invited for publication in Journal of Supercomputing)
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Dynamic Right-Sizing in TCP.
  Michael E. Fisk, Wu-chun Feng.
  In Proceedings of the 2nd Annual Los Alamos Computer Science Institute Symposium (LACSI 2001), Santa Fe, New Mexico, October 2001.
  LA-UR 01-5460.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• MAGNeT: Monitor for Application-Generated Network Traffic.
  Wu-chun Feng, Jeffrey R. Hay, Mark K. Gardner.
  In Proceedings of the 10th International Conference on Computer Communication and Networking (ICCCN'01), Scottsdale, Arizona, October 2001.
  LA-UR 01-5063.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Dynamic Right-Sizing: A Simulation Study.
  Eric Weigle, Wu-chun Feng.
  In Proceedings of the 10th International Conference on Computer Communication and Networking (ICCCN 2001), Scottsdale, Arizona, October 2001.
  LA-UR 01-5062.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Gang Scheduling with Lightweight User-Level Communication.
  Eitan Frachtenberg, Fabrizio Petrini, Salvador Coll, Wu-chun Feng.
  In Proceedings of the Workshop on Scheduling and Resource Management for Cluster Computing (in conjunction with the ICPP01) (SRMCC 2001), Valencia, Spain, September 2001.
  LA-UR 00-0894.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• A Case for TCP Vegas in High-Performance Computational Grids.
  Eric Weigle, Wu-chun Feng.
  In Proceedings of the 9th IEEE International Symposium on High-Performance Distributed Computing (HPDC'01), San Francisco, California, August 2001.
  LA-UR 01-3420.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• The Quadrics Network (QsNet): High-Performance Clustering Technology.
  Fabrizio Petrini, Wu-chun Feng, Adolfy Hoisie, Salvador Coll, Eitan Frachtenberg.
  In Proceedings of the 9th IEEE Hot Interconnects. (HotI'01), Palo Alto, California, August 2001.
  LA-UR 01-4100.  (Selected for publication in IEEE Micro)
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• The Effects of Inter-Packet Spacing on the Delivery of Multimedia Content.
  Apu C. Kapadia, Annette C. Feng, Wu-chun Feng.
  In Proceedings of the 21st International Conference on Distributed Computing Systems (ICDCS'01), Scottsdale, Arizona, April 2001.
  LA-UR 01-0904.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Performance Evaluation of the Quadrics Interconnection Network.
  Fabrizio Petrini, Adolfy Hoisie, Wu-chun Feng, Richard Graham.
  In Proceedings of the IEEE Workshop on Communication Architectures for Clusters (CAC'01), held in conjunction with IPDPS 2001, San Francisco, California, April 2001.
  LA-UR 00-5205.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Why TCP Will Not Scale for the Next-Generation Internet.
  Eric Weigle, Wu-chun Feng, Mark K. Gardner.
  In Proceedings of the 11th IEEE Workshop on Local and Metropolitan Area Networks. (LANMAN 2001), Boulder, Colorado, March 2001.
  LA-UR 01-1039.  
    BibTeX    Paper (PDF)   
   
• The Failure of TCP in High-Performance Computational Grids.
  Wu-chun Feng, Peerapol Tinnakornsrisuphap.
  In Proceedings of the SC 2000: High-Performance Networking and Computing Conference (SC2000), Dallas, Texas, November 2000.
  LA-UR 00-3765.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• The Adverse Impact of the TCP Congestion-Control Mechanism in Heterogeneous Computing Systems.
  Wu-chun Feng, Peerapol Tinnakornsrisuphap.
  In Proceedings of the 29th International Conference on Parallel Processing (ICPP'00), Toronto, Canada, August 2000.
  LA-UR 00-2554.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Buffered Coscheduling: A New Methodology for Multitasking Parallel Jobs on Distributed Systems.
  Fabrizio Petrini, Wu-chun Feng.
  In Proceedings of the 14th International Parallel & Distributed Processing Symposium. (IPDPS'00), Cancun, Mexico, May 2000.
  LA-UR 00-0892.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Time-Sharing Parallel Jobs in the Presence of Multiple Resource Requirements.
  Fabrizio Petrini, Wu-chun Feng.
  In Proceedings of the 6th International Workshop on Job Scheduling Strategies for Parallel Processing, May 2000.
  LA-UR 00-6023.  Also in Lecture Notes in Computer Science Vol. 1911
    BibTeX    Paper (Postscript)   
   
• Scheduling with Global Information in Distributed Systems.
  Fabrizio Petrini, Wu-chun Feng.
  In Proceedings of the 20th International Conference on Distributed Computing Systems (ICDCS'00), Taipei, Taiwan, April 2000.
  LA-UR 00-0894.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• On the Burstiness of the TCP Congestion-Control Mechanism in a Distributed Computing System.
  Peerapol Tinnakornsrisuphap, Wu-chun Feng, Ian R. Philp.
  In Proceedings of the 20th International Conference on Distributed Computing Systems (ICDCS'00), Taipei, Taiwan, April 2000.
  LA-UR 00-0481.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Efficient Resource Utilization on a Massively Parallel Systems.
  Fabrizio Petrini, Wu-chun Feng.
  In Proceedings of the 7th International Conference on Advanced Computing & Communications . (ADCOM'99), Roorkee, India, December 1999.
  LA-UR 99-4930.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Dynamic Client-Side Scheduling in a Real-Time CORBA System.
  Wu-chun Feng.
  In Proceedings of the 23rd International Computer Software & Applications Conference (COMPSAC'99), Phoenix, Arizona, October 1999. [Based on research performed at UIUC]
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• From HiPPI-800 to HiPPI-6400: A Changing of the Guard and Gateway to the Future.
  Don E. Tolmie, Mike T. Boorman, Andy DuBois, Dave DuBois, Wu-chun Feng, Ian R. Philp.
  In Proceedings of the 6th International Conference on Parallel Interconnects (PI'99), Anchorage, Alaska, October 1999.
  LA-UR 99-4450.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• The Design of an Open Real-Time System Using CORBA.
  Wu-chun Feng.
  In Proceedings of the 1st International Workshop on Multimedia Network Systems (MNS'99), Aizu, Japan, September 1999. [Based on research performed at UIUC]
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Performance of Algorithms for Scheduling Real-Time Systems with Overrun and Overload.
  Mark K. Gardner, Jane W. S. Liu.
  In Proceedings of the 11th Euromicro Conference on Real-Time Systems. (ERTS), York, England, June 1999. [Based on research performed at UIUC]
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Analyzing Stochastic Fixed-Priority Real-Time Systems.
  Mark K. Gardner, Jane W. S. Liu.
  In Proceedings of the 5th International Conference on Tools and Algorithms for the Construction and Analysis of Systems, Joint European Conferences on Theory and Practice of Software, March 1999. Also in Lecture Notes in Computer Science, Vol. 1579
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• The Scheduled Transfer (ST) Protocol.
  Ian R. Philp, Yin-Ling Liong.
  In Proceedings of the 3rd International Workshop on Communication, Architecture, and Applications for Network-Based Parallel Computing (CANPC'99), January 1999. (electronic version unavailable). Also in Lecture Notes in Computer Science, Vol. 1602
    BibTeX   
   
• Extending CORBA for Soft Real-Time Applications.
  Wu-chun Feng.
  In Proceedings of the International Conference on Networks & Communication Systems, May 1998. [Based on research performed at UIUC] (electronic version unavailable)
    BibTeX   
   
• Providing for an Open Real-Time CORBA.
  Wu-chun Feng, Umar, Syyid, Jane W. S. Liu.
  In Proceedings of the IEEE Workshop on Middleware for Distributed Real-Time Systems and Services, December 1997. [Based on research performed at UIUC]
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Technical Reports
  
  
• When Discreteness Meets Continuity: Energy-Optimal DVS Scheduling Revisited.
  Chung-hsing Hsu, Wu-chun Feng.
  Los Alamos technical report LA-UR 05-3104, February 2005.
    BibTeX    Paper (PDF)   
   
• GREEN: A Practical Solution for Ensuring Fairness in a Best-Effort Network.
  Apu C. Kapadia, Wu-chun Feng, R. Campbell.
  Los Alamos technical report LA-UR 03-2372, 2003.
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Interference Control at Packet-level in Wireless Networks with Quality of Service Support.
  Sami Ayyorgun, Rene L. Cruz.
  Los Alamos technical report LA-UR 03-8012, October 2003.
    BibTeX    Paper (Postscript)   
   
• A New Traffic Model and Its Implications over Multiplexers and Switches.
  Sami Ayyorgun, Wu-chun Feng.
  Los Alamos technical report LA-UR 03-7268, September 2003.
    BibTeX    Paper (Postscript)   
   
• A Systematic Approach to Probablistic Quality of Service Guarantees in Communication Networks.
  Sami Ayyorgun, Wu-chun Feng.
  Los Alamos technical report LA-UR 03-4477, September 2003.
    BibTeX    Paper (Postscript)   
   
• A Restricted Matching Problem on Bipartite Graphs.
  Sami Ayyorgun, Wu-chun Feng.
  Los Alamos technical report LA-UR 03-7269, September 2003.
    BibTeX    Paper (Postscript)   
   
• A Deterministic Definition of Burstiness for Network Traffic Characterization.
  Sami Ayyorgun, Wu-chun Feng.
  Los Alamos technical report LA-UR 03-4477, June 2003.
    BibTeX    Paper (PDF)   
   
• A Service Curve Model with Loss.
  Sami Ayyorgun, Cruz. Rene L..
  Los Alamos technical report LA-UR 03-3939, June 2003.
    BibTeX    Paper (PDF)   
   
• A Probabilistic Definition of Burstiness Characterization.
  Sami Ayyorgun, Wu-chun Feng.
  Los Alamos technical report LA-UR 03-3668, May 2003.
    BibTeX    Paper (PDF)   
   
• GREEN+IDMAPS: A Practical Solution for Ensuring Fairness in a Biased Internet.
  Apu C. Kapadia, Sunil Thulasidasan, Wu-chun Feng.
  Los Alamos technical report LA-UR 02-6126, 2002. (electronic version unavailable)
    BibTeX   
   
• Performance Evaluation of the Quadrics Interconnection Network.
  Fabrizio Petrini, Adolfy Hoisie, Wu-chun Feng, Richard Graham.
  Los Alamos technical report LA-UR 00-5205, 2001.
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Rate-Adjustment Algorithm for Aggregate TCP Congestion Control.
  Peerapol Tinnakornsrisuphap, R. Agrawal, Wu-chun Feng.
  Los Alamos technical report LA-UR 00-4220, 2000.
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Dynamic Adjustment of TCP Window Sizes.
  Michael E. Fisk, Wu-chun Feng.
  Los Alamos technical report LA-UR 00-3321, 2000.
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Poster Sessions
  
  
• mpiBLAST: Parallelization of BLAST for Computational Clusters.
  Aaron E. Darling, Wu-chun Feng.
  In SC 2002: High-Performance Networking and Computing Conference (SC2002), Baltimore, Maryland, November 2002.
  LA-UR 02-7222.  
    BibTeX    Paper (PDF)   
   
• BLASTing Off with Green Destiny.
  Aaron E. Darling, Wu-chun Feng.
  In IEEE Computer Society Bioinformatics Conference, (CSB'02), Palo Alto, California, August 2002.
  LA-UR 02-5598.  
    BibTeX    Paper (PDF)   
   
• Dynamic Right-Sizing: TCP Flow-Control Adaptation.
  Michael E. Fisk, Wu-chun Feng.
  In SC 2001: High-Performance Networking and Computing Conference (SC 2001), Denver, Colorado, November 2001.
  LA-UR 01-2823.  
    BibTeX    Paper (PDF)    Paper (Postscript)   
   
• Selected Talks
  
  
• Global Climate Warming? Yes … In the Machine Room.
  Wu-chun Feng.
  In Clusters and Computational Grids for Scientific Computing, September 2006. (invited talk)
    BibTeX    Presentation (PDF)   
   
• Efficient Data Handling in Comparative Genome Analysis Applications.
  Heshan Lin, Xiaosong Ma, Wu-chun Feng, A. Geist, Nagiza Samatova.
  In 12th SIAM Conference on Parallel Processing for Scientific Computing, February 2006.
    BibTeX    Presentation (PDF)   
   
• Whole Genome, Physics-Based Sequence Alignment for Pathogen Signature Design.
  J. Gans, Wu-chun Feng, M. Wolinsky.
  In 12th SIAM Conference on Parallel Processing for Scientific Computing, February 2006.
    BibTeX    Presentation (PDF)   
   
• mpiBLAST evolves: success, collaborations, and challenges.
  Aaron E. Darling.
  In Bioinformatics Open-Source Conference 2005 (BOSC'2005), June 2005.
    BibTeX    Presentation (PDF)   
   
• The Evolution of Power-Aware, High-Performance Clusters: From the Datacenter to the Desktop.
  Wu-chun Feng.
  In IEEE International Parallel & Distributed Processing Symposium (IPDPS) Workshop on High-Performance, Power-Aware Computing, April 2005.
    BibTeX    Presentation (PDF)   
   
• Green Destiny: A 240-Node Compute Cluster in Five Square Feet.
  Wu-chun Feng.
  In IEEE Distinguished Visitors Program, October 2004. Invited Talk
    BibTeX    Presentation (PDF)   
   
• Green Destiny and Its Evolving Parts.
  Wu-chun Feng, Chung-hsing Hsu.
  In Award Presentation for Innovative Supercomputer Architecture at the 18th International Supercomputer Conference, June 2004.
    BibTeX    Presentation (PDF)   
   
• Green Destiny + mpiBLAST = Bioinfomagic.
  Wu-chun Feng.
  In 10th International Conference on Parallel Computing, September 2003.
    BibTeX    Presentation (PDF)   
   
• Green Destiny: A 240-Node Compute Cluster in One Cubic Meter.
  Wu-chun Feng.
  In Eli Lilly, September 2002. NCSA at the University of Illinois at Urbana-Champaign with a broadcast over the Access Grid, October 2002, Rocky Mountain Institute Data Charrette, February 2003
    BibTeX    Presentation (PDF)   
   
• Is TCP an Adequate Protocol for High-Performance Computing Needs?.
  Wu-chun Feng.
  In SC 2000: High-Performance Networking and Computing Conference (Panel at SC2000), November 2000.
    BibTeX    Presentation (PDF)    Presentation (Postscript)   
   
• Network Interface Cards (NICs) as First-Class Citizens..
  Wu-chun Feng.
  In Ohio State University, November 1999.
    BibTeX    Presentation (PDF)   
   
• Theses
  
  
• Probabilistic Analysis and Scheduling of Critical Soft Real-Time Systems.
  Mark K. Gardner.
  University of Illinois, September 1999. [Based on research performed at UIUC]
    BibTeX    Paper (PDF)    Paper (Postscript)